Graph-linked unified embedding

Author: xyjn

August undefined, 2024

WebAug 28, 2024 · Graph-linked unified embedding for single-cell multi-omics data integration bioinformatics deep-learning single-cell single-cell-multiomics Python MIT 27 185 6 0 Updated on Aug 28 Cell_BLAST Public A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation. bioinformatics single-cell single-cell-rna-seq deep-learning WebMulti-omics single-cell data integration and regulatory inference with graph-linked embedding. ZJ Cao, G Gao. Nature Biotechnology 40 (10), 1458-1466, 2024. 54: ... Cross-Linked Unified Embedding for cross-modality representation learning. X Tu, ZJ Cao, S Mostafavi, G Gao. Advances in Neural Information Processing Systems 35, 15942 …

scglue.models — scglue 0.3.2 documentation - Read the Docs

WebThis section provides detailed API documentation for all public functions and classes in scglue. scglue GLUE (Graph-Linked Unified Embedding) . Read the Docs WebMay 1, 2024 · A new study presents GLUE (graph-linked unified embedding), a generalizable computational framework for integrating unpaired single-cell multi-omics … can i record a tiktok on my computer

Multi-omics integration and regulatory inference for …

WebDescription. Graph-linked unified embedding for single-cell multi-omics data integration WebOct 12, 2024 · Finally, the recently published Graph-Linked Unified Embedding (GLUE) framework (Cao and Gao, 2024) is based on the construction of a guidance graph based on prior knowledge of the … WebMulti-omics single-cell data integration and regulatory inference with graph-linked embedding. ZJ Cao, G Gao. Nature Biotechnology 40 (10), 1458-1466, 2024. 54: ... can i record a webinar i am watching

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WebRecently, Cao and Gao developed a computational method, named GLUE (graph-linked unified embedding), 8 to fill the gap through modelling regulatory interactions across … WebSep 6, 2024 · With the ever-increasing amount of single-cell multi-omics data accumulated during the past years, effective and efficient computational integration is becoming a … can i record a phone conversationWeb(graph-linked unified embedding), which bridges the gap by modeling regulatory interactions across omics layers explicitly. Systematic benchmarking demonstrated that … can i record a telephone conversation uk

"We assume that there are K different omics layers to be integrated, each with a distinct feature set \({{{\mathcal{V}}}}_k,k = 1,2, \ldots ,K\). For example, in scRNA-seq, \({\mathcal{V}}_k\) is the set of genes, while in scATAC-seq, \({{{\mathcal{V}}}}_k\) is the set of chromatin regions. The data … See more As shown in previous work31, canonical adversarial alignment amounts to minimizing a generalized form of Jensen–Shannon divergence among the cell embedding distributions of different omics layers: where … See more We applied linear dimensionality reduction using canonical methods such as PCA (for scRNA-seq) or LSI (latent semantic indexing, for scATAC … See more To handle batch effect within omics layers, we incorporate batch as a covariate of the data decoders. Assuming \(b \in \left\{ {1,2, \ldots ,B} \right\}\), is the batch index, where B is the total number of batches, the decoder … See more The integration consistency score is a measure of consistency between the integrated multi-omics data and the guidance graph. First, we jointly cluster cells from all omics layers in the aligned cell embedding … See more " - Graph-linked unified embedding

scglue.models — scglue 0.3.2 documentation - Read the Docs

Multi-omics integration and regulatory inference for …

Graph-linked unified embedding

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